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| Name | Last modified | Size | Description |
|---|---|---|---|---|
| Parent Directory | - | ||
| 01_make_seRNA.R | 2022-08-18 02:52 | 1.3K | |
| 02_clustering.R | 2022-08-18 02:52 | 7.8K | |
| 03_annotation.R | 2022-08-18 02:52 | 10K | |
| 04_peak_calling.R | 2022-08-18 02:52 | 9.2K | |
| 05_make_fpkm.R | 2022-08-18 02:52 | 3.3K | |
| 06_filter_peaks.R | 2022-08-18 02:52 | 1.9K | |
| 07_add_timecourse.R | 2022-08-18 02:52 | 5.1K | |
| 08_CREs.R | 2022-08-18 02:52 | 14K | |
| 09_CRE_annotation.R | 2022-08-18 02:52 | 1.4K | |
| 10_optimize_nmf.R | 2022-08-18 02:52 | 2.8K | |
| 11_create_nmf.R | 2022-08-18 02:52 | 4.4K | |
| 12_ChromHMM.R | 2022-08-18 02:52 | 3.1K | |
| 13_tf_expression.R | 2022-08-18 02:52 | 4.4K | |
| 14_nmf_motif_enrichment.R | 2022-08-18 02:52 | 2.5K | |
| 15_enrich_gene_trends.R | 2022-08-18 02:52 | 5.3K | |
| 16_enrich_major_trends_trajectories.R | 2022-08-18 02:52 | 5.9K | |
| 17_enrich_go.R | 2022-08-18 02:52 | 6.3K | |
| 18_enrich_disease.R | 2022-08-18 02:52 | 6.7K | |
| 19_make_networks.R | 2022-08-18 02:52 | 5.0K | |
| 20_make_networks_organoid.R | 2022-08-18 02:52 | 4.9K | |
| CRE.R | 2022-08-18 02:52 | 6.0K | |
| ChromHMM.R | 2022-08-18 02:52 | 1.3K | |
| Disease_enrichment.R | 2022-08-18 02:52 | 1.8K | |
| Fig5_pie_charts/ | 2022-08-18 02:52 | - | |
| GeneTrends.R | 2022-08-18 02:52 | 5.1K | |
| Hist_CRE.R | 2022-08-18 02:52 | 1.1K | |
| Organoid_Integration_scATACseq.R | 2022-08-18 02:52 | 1.9K | |
| PCA.R | 2022-08-18 02:52 | 3.1K | |
| PeakLength.R | 2022-08-18 02:52 | 812 | |
| SuppFig4_AnnotationCluster/ | 2022-08-18 02:52 | - | |
| TF_GeneTrends.R | 2022-08-18 02:52 | 3.7K | |
| TF_diseases.R | 2022-08-18 02:52 | 1.2K | |
| TF_ion_transporter.R | 2022-08-18 02:52 | 4.8K | |
| TF_plots.R | 2022-08-18 02:52 | 10K | |
| TSS_distance.R | 2022-08-18 02:52 | 1.3K | |
| disease_enrichment.R | 2022-08-18 02:52 | 7.9K | |
| footprinting.R | 2022-08-18 02:52 | 3.9K | |
| footprinting_plots.R | 2022-08-18 02:52 | 5.1K | |
| fpkm_motif.R | 2022-08-18 02:52 | 4.6K | |
| ipkm_tf_regions_plots.R | 2022-08-18 02:52 | 5.4K | |
| motif_enrichment.R | 2022-08-18 02:52 | 4.8K | |
| motif_enrichment_trajectories.R | 2022-08-18 02:52 | 2.1K | |
| multiple_panels.R | 2022-08-18 02:52 | 3.2K | |
| network_plots.R | 2022-08-18 02:52 | 4.5K | |
| network_visualization.R | 2022-08-18 02:52 | 2.8K | |
| organoids_scATACseq.R | 2022-08-18 02:52 | 2.8K | |
| peak_cre_plots.R | 2022-08-18 02:52 | 22K | |
| plot_enrichment_nmf.R | 2022-08-18 02:52 | 4.5K | |
| priortize_TFs.R | 2022-08-18 02:52 | 3.0K | |
| quality_plot_RNA.R | 2022-08-18 02:52 | 2.7K | |
| quality_plots.R | 2022-08-18 02:52 | 13K | |
| transfer_learning_plots.R | 2022-08-18 02:52 | 36K | |