Index of /assets/pfc_development/snRNAseq/notebooks

	Name	Last modified	Size	Description
	Parent Directory		-
	01__combine-data-and-add-features.ipynb	2022-08-18 02:52	33K
	02__clean-and-filter.ipynb	2022-08-18 02:52	2.7M
	03__whole-tissue_clustering.ipynb	2022-08-18 02:52	8.8M
	04__inhibitory-neu_clustering.ipynb	2022-08-18 02:52	18M
	05__define-major-clusters-and-dev-trajectories.ipynb	2022-08-18 02:52	10M
	06__full_whole-tissue_hotspot_DEGs_raw-counts.ipynb	2022-08-18 02:52	236K
	07__pseudo-bulk-by-batch_limma-voom_data-prep.ipynb	2022-08-18 02:52	106K
	08__limma-voom_quality-control_123tut.ipynb	2022-08-18 02:52	4.1M
	09__major-trajectory_limma-voom_data-prep.ipynb	2022-08-18 02:52	91K
	10__major-trajectory_devDEGs_123tut.ipynb	2022-08-18 02:52	16K
	11__dev-DEGs_age-trend-fits_rate-of-change.ipynb	2022-08-18 02:52	764K
	12__major-trajectory_dev-DEGs_stage-trend-fits.ipynb	2022-08-18 02:52	377K
	13__Nearest-Neighbors_Trajectory-Maturation.ipynb	2022-08-18 02:52	359K
	13__nearest-neighbors_trajectory-maturation.ipynb	2022-08-18 02:52	360K
	14__stage-trend-fits_clustering.ipynb	2022-08-18 02:52	7.6M
	15__Trajectory-devDEG_GOs-terms.ipynb	2022-08-18 02:52	11K
	15__trajectory-devDEG_GO-terms.ipynb	2022-08-18 02:52	11K
	16__Eigentrends-of-selected-GO-terms.ipynb	2022-08-18 02:52	243K
	16__eigentrends-of-select-GO-terms.ipynb	2022-08-18 02:52	243K
	17__loom-file-preprocessing.ipynb	2022-08-18 02:52	41K
	18__whole-tissue_scVelo-and-CytoTrace.ipynb	2022-08-18 02:52	1.3M
	19__inhibitory-neu_scVelo.ipynb	2022-08-18 02:52	12M
	20__inhibitory-neu_CellRank-CytoTrace.ipynb	2022-08-18 02:52	6.7M
	cellrank_requirements.txt	2022-08-18 02:52	2.2K
	hotspot_requirements.txt	2022-08-18 02:52	3.4K
	main_requirements.txt	2022-08-18 02:52	1.8K
	new_misc_code.py	2022-08-18 02:52	4.5K
	scrublet_requirements.txt	2022-08-18 02:52	12K